# MicroHapulator

**MicroHapulator** is software for empirical haplotype calling, analysis, and basic forensic interpretation of microhaplotypes from Illumina sequence data.
Also included are tools for constructing mock genotypes and simulating Illumina sequencing of single- and multiple-contributor samples for testing and development purposes.
MicroHapulator can be configured for use with any published or custom panel.
[MicroHapDB](https://github.com/bioforensics/microhapdb) can be used to prepare marker definitions, population frequencies, and reference sequences—see [the configuration documentation](config.md) for more details.

If you're new to forensic DNA analysis, [this primer](primer.md) is the recommended entry point for the documentation.
Otherwise, refer to the table of contents below for links to various manuals, instructions, and reference materials.


## Table of Contents

```{toctree}
:maxdepth: 2

install
primer
typing
manual
config
devel
api
cli
conduct
```


## Indices and tables

- {ref}`genindex`
- {ref}`modindex`
- {ref}`search`